* doc/guix.texi (The Store Monad): Add funny quote about "running" a monadic
  value.

* gnu/packages/bioinformatics.scm (plink): New variable.
* gnu/packages/patches/plink-1.07-unclobber-i.patch: New file.

* gnu/packages/synergy.scm (synergy)[version]: Upgrade to 1.7.3
  [source]: Use github for source download.  Add snippet to remove
  bundled source and binaries.
  [inputs]: Add openssl.
  [arguments]: Copy example configuration files to out during 'install
  phase.

* gnu/packages/compression.scm (sfarkxtc): New variable.

* gnu/packages/compression.scm (sfarklib): New variable.

* gnu/packages/audio.scm (guitarix): New variable.

* gnu/packages/audio.scm (ardour): Update to 4.1.

* gnu/packages/compression.scm (libtar): New variable.

 * gnu/package/pv.scm (pv): New file.
 * gnu-system.am (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Alex Kost <alezost@gmail.com>

* gnu/packages/commencement.scm (gcc-boot0, cross-gcc-wrapper,
  libstdc++, gcc-final): Refer to GCC instead of GCC-4.9.
* gnu/packages/cross-base.scm (%xgcc): New variable.
  (cross-gcc-arguments, cross-gcc): Refer to %XGCC instead of GCC-4.9.
* gnu/packages/llvm.scm (clang-from-llvm): Refer to GCC instead of GCC-4.9.
* gnu/packages/make-bootstrap.scm (package-with-relocatable-glibc,
  %gcc-static, %gcc-stripped): Likewise.

* gnu/packages/video.scm (youtube-dl): Update to 2015.06.25.

* gnu/packages/python.scm (python2-fastlmm): New variable.

* gnu/packages/python.scm (python2-pysnptools): New variable.

* emacs/guix-base.el (guix-define-buffer-type): Move common key bindings
  from here...
  (guix-root-map): ... to here.  New variable.
* emacs/guix-info.el (guix-info-mode-map): Use it.
* emacs/guix-list.el (guix-list-mode-map): Use it.
* doc/emacs.texi (Emacs Keymaps): Document it.

* gnu/packages/nettle.scm (nettle)[arguments]: Add 'disable-ifunc-init-method'
  phase.

* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
  "gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
   (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
   (octave)[native-inputs]: Likewise.
   (gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
  "gfortran".

* gnu/packages/gcc.scm (gcc): New variable.
* gnu/packages/gcc.scm (gfortran): New variable.

This reverts commit e53fc0c8, which add it wrongly to gst-plugins-base.

* gnu/packages/gstreamer.scm (gstreamer)[native-search-paths]: New field.
  (gst-plugins-base)[native-search-paths]: Remove.

* guix/import/pypi.scm (python->package-name, maybe-inputs, compute-inputs,
  guess-requirements): New procedures.
* guix/import/pypi.scm (guix-hash-url): Now takes a filename instead of an
  URL as input.
* guix/import/pypi.scm (make-pypi-sexp): Now tries to generate the inputs
  automagically.
* tests/pypi.scm: Update the test.

* guix/cpio.scm (file->cpio-header*): New procedure.
* gnu/build/linux-initrd.scm (write-cpio-archive): Add #:file->header argument
  to 'cpio:write-cpio-archive'.

* gnu/build/linux-initrd.scm (write-cpio-archive)[files]: Use 'sort' instead
  of 'reverse'.

* gnu/build/linux-initrd.scm (write-cpio-archive): Remove 'open-pipe*' and
  related calls.  Compute list of files in 'files' variable.  Use
  'cpio:write-cpio-archive'.  Remove #:cpio parameter.
  (build-initrd): Remove #:cpio parameter.
* gnu/system/linux-initrd.scm (expression->initrd): Likewise, and adjust
  BUILDER accordingly.  Add (guix cpio) to #:modules.

* guix/cpio.scm, tests/cpio.scm: New files.
* Makefile.am (MODULES): Add guix/cpio.scm.
  (SCM_TESTS): Add tests/cpio.scm.

* tests/nar.scm (file-tree-equal?)[file=?]: Move to...
* guix/tests.scm (file=?): ... here.  New procedure.

* gnu/packages/gnupg.scm (pius)[inputs]: Change GNUPG to GNUPG-2.0.

* gnu/packages/julia.scm (julia)[arguments]: Use modify-phases syntax for
  build phases and add missing return values.

* gnu/packages/statistics.scm (r)[inputs]: Replace gfortran-4.8 with
  gfortran-4.9.

* gnu/packages/gcc.scm (gfortran-4.9): New variable.

* gnu/packages/bioinformatics.scm (hmmer): New variable.

* gnu/packages/screen.scm (screen)[native-inputs]: New field.

* gnu/packages/audio.scm (setbfree): New variable.

* gnu/packages/gl.scm (ftgl)[inputs,propagated-inputs]: Move "freetype" from
  "inputs" to "propagated-inputs".

* gnu/packages/audio.scm (faust)[arguments]: Remove the phase
  'remove-prebuilt-library...
* gnu/packages/audio.scm (faust)[origin]: ...and move it here as a snippet.

* gnu/packages/bioinformatics.scm (star): Update to 2.4.2a.

* gnu/packages/bioinformatics.scm (miso)[source]: Patch "setup.py" to use
  "setuptools" so that executables are built.
* gnu/packages/bioinformatics.scm (miso)[native-inputs]: Add "python2-mock"
  and "python2-pytz".

* gnu/packages/bioinformatics.scm (idr): New variable.

* gnu/packages/linux.scm (linux-libre): Update to 4.1.
  [inputs]: Remove gcc-4.9, since it is now the default compiler.
* gnu/packages/linux-libre-i686.conf, gnu/packages/linux-libre-x86_64.conf:
  Update to 4.1 configs from <https://jxself.org/git/?p=kernel-configs.git>.

* gnu/packages/gnome.scm (gnome-klotski): New variable.

Suggested by Alex Kost <alezost@gmail.com>.

* gnu/system.scm (emacs-site-file): Use 'geiser-install to load geiser
  instead of setting 'geiser-guile-load-path' manually.