* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.400.0.0.

* gnu/packages/statistics.scm (r-yaml): Update to 2.1.17.

* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.7.
[inputs]: Add zlib.

* gnu/packages/statistics.scm (r-rpart): Update to 4.1-13.

* gnu/packages/statistics.scm (r-mass): Update to 7.3-49.

* gnu/packages/databases.scm (r-rmysql): Update to 0.10.14.

* gnu/packages/cran.scm (r-pillar): Update to 1.2.1.

* gnu/packages/cran.scm (r-truncnorm): Update to 1.0-8.

* gnu/packages/bioinformatics.scm (r-scran): Update to 1.6.8.

* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.63.

* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.30.1.

* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.3.

* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.9.

* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.9.

* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.1.

* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.3.

* gnu/packages/enlightenment.scm (efl)[outputs]: Add 'include' output.

* gnu/packages/enlightenment.scm (efl): Update to 1.20.7.

* gnu/packages/music.scm (patchmatrix): New variable.

* gnu/packages/haskell.scm (ghc-uuid)[arguments]: Allow building with a newer
version of QuickCheck.

* gnu/packages/games.scm (golly): Fix source url.

* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-36.

* gnu/packages/libreoffice.scm (libe-book): Update to 0.1.3.
[propagated-inputs]: Add LIBLANGTAG.

* gnu/packages/libreoffice.scm (libabw): Update to 0.1.2.

* gnu/packages/libreoffice.scm (libpagemaker): Update to 0.0.4.
[source](uri): Use HTTPS.

* gnu/packages/libreoffice.scm (libmspub): Update to 0.1.4.
[source](uri): Use HTTPS.

* gnu/packages/xorg.scm (xorgproto): Update to 2018.4.

* gnu/packages/ci.scm (cuirass): Update to aa4c778.

Fixes <https://bugs.gnu.org/30641>.
Reported by Oleg Pykhalov <go.wigust@gmail.com>.

* guix/import/cpan.scm (cpan-version): Drop the "v" prefix when it is
there.

* gnu/packages/gnome.scm (nautilus): Update to 3.26.2.
[build-system]: Use meson-build-system.
[native-inputs]: Add desktop-file-utils and gtk+:bin.
[inputs]: Add libselinux.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

Fixes <https://bugs.gnu.org/30569>.
Reported by Andreas Enge <andreas@enge.fr>.

* guix/profiles.scm (manifest-add): Don't append ENTRIES as is.
Instead, cons each element of ENTRIES as we fold over it.
Remove unneeded ellispes in 'match' patterns.

The Python msgpack library changed its name, but borg (and possibly
other packages) still uses the old name.

Fixes <https://bugs.gnu.org/30662>.

* gnu/packages/python.scm (python-msgpack-transitional): New variable.
* gnu/packages/backup.scm (borg)[inputs]: Use it.

* gnu/packages/emacs.scm (emacs-esxml): Remove.

The package already exists with the name "emacs-nov-el".

* gnu/packages/emacs.scm (emacs-nov): Remove.

* gnu/packages/java.scm (java-bouncycastle-bcpkix)[arguments]: Use invoke.

* gnu/packages/java.scm (java-bouncycastle-bcprov)[arguments]: Use invoke.

* gnu/packages/java.scm (java-lz4)[arguments]: Use invoke.

* gnu/packages/java.scm (antlr3-3.1)[name]: Remove.
[arguments]: Adjust accordingly.

* gnu/packages/java.scm (antlr3-3.1)[arguments]: Use invoke.

* gnu/packages/java.scm (java-jansi-native)[arguments]: Use "invoke"; remove
useless "mkdir-p".