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Commits on Source (14568)
......@@ -11,6 +11,6 @@ DerivePointerAlignment: false
ExperimentalAutoDetectBinPacking: true
IndentWidth: 4
PointerAlignment: Left
Standard: C++11
Standard: Cpp11
TabWidth: 4
UseTab: Never
---
Checks:
'-*,clang-diagnostic-*,clang-analyzer-*,cppcoreguidelines-pro-type-member-init, *explicit-conversions*, google-explicit-constructor, google-readability-braces-around-statements, modernize-loop-convert, modernize-use-default-member-init, modernize-use-emplace, modernize-use-using, readability-braces-around-statements, readability-else-after-return, readability-named-parameter, *readability-namespace-comments, *readability-inconsistent-*, readability-redundant-member-init, readability-simplify-boolean-expr, readability-string-compare'
Checks: >
-*
,clang-diagnostic-*,
clang-analyzer-*,
cppcoreguidelines-pro-type-member-init,
*explicit-conversions*,
google-explicit-constructor,
google-readability-braces-around-statements,
modernize-loop-convert,
modernize-use-default-member-init,
modernize-use-emplace,
modernize-use-using,
readability-braces-around-statements,
readability-else-after-return,
readability-named-parameter,
*readability-namespace-comments,
*readability-inconsistent-*,
readability-redundant-member-init,
readability-simplify-boolean-expr,
readability-string-compare
WarningsAsErrors: ''
HeaderFilterRegex: '.*'
WarningsAsErrors: ""
HeaderFilterRegex: ".*"
AnalyzeTemporaryDtors: false
FormatStyle: file
FormatStyle: file
CheckOptions:
- key: google-readability-braces-around-statements.ShortStatementLines
value: "1"
- key: hicpp-braces-around-statements.ShortStatementLines
value: "1"
- key: readability-braces-around-statements.ShortStatementLines
value: "1"
format:
tab_size: 4
max_subgroups_hwrap: 3
dangle_parens: true
command_case: "unchanged"
line_width: 80
lint:
disabled_codes:
- "C0301"
- "C0301" # Line to long.
- "C0113" # Missing COMMAND for optional dependencies.
parse:
vartags:
- !!python/tuple
- set_property
- - cmdline
additional_commands:
ogs_add_library:
pargs:
nargs: 2+
addtest:
pargs:
nargs: "*"
flags:
- DISABLED
spelling: AddTest
kwargs:
EXECUTABLE: 1
PATH: 1
NAME: 1
WRAPPER: 1
TESTER: 1
ABSTOL: 1
RELTOL: 1
RUNTIME: 1
DEPENDS: 1
WORKING_DIRECTORY: 1
EXECUTABLE_ARGS: +
DATA: +
DIFF_DATA:
pargs:
tags:
- cmdline
WRAPPER_ARGS: +
REQUIREMENTS: +
PYTHON_PACKAGES: +
ogstest:
pargs:
nargs: "*"
flags:
- DISABLED
spelling: OgsTest
kwargs:
PROJECTFILE: 1
RUNTIME: 1
WRAPPER: +
cpmaddpackage:
pargs:
nargs: "*"
flags: []
spelling: CPMAddPackage
kwargs: &cpmaddpackagekwargs
NAME: 1
FORCE: 1
VERSION: 1
GIT_TAG: 1
DOWNLOAD_ONLY: 1
GITHUB_REPOSITORY: 1
GITLAB_REPOSITORY: 1
GIT_REPOSITORY: 1
SVN_REPOSITORY: 1
SVN_REVISION: 1
SOURCE_DIR: 1
DOWNLOAD_COMMAND: 1
FIND_PACKAGE_ARGUMENTS: 1
NO_CACHE: 1
GIT_SHALLOW: 1
URL: 1
URL_HASH: 1
URL_MD5: 1
DOWNLOAD_NAME: 1
DOWNLOAD_NO_EXTRACT: 1
HTTP_USERNAME: 1
HTTP_PASSWORD: 1
EXCLUDE_FROM_ALL: 1
OPTIONS: +
PATCH_COMMAND: +
cpmfindpackage:
pargs:
nargs: "*"
flags: []
spelling: CPMFindPackage
kwargs: *cpmaddpackagekwargs
cpmdeclarepackage:
pargs:
nargs: "*"
flags: []
spelling: CPMDeclarePackage
kwargs: *cpmaddpackagekwargs
packageproject:
pargs:
nargs: "*"
flags: []
spelling: packageProject
kwargs:
NAME: 1
VERSION: 1
INCLUDE_DIR: 1
INCLUDE_DESTINATION: 1
BINARY_DIR: 1
COMPATIBILITY: 1
VERSION_HEADER: 1
DEPENDENCIES: +
cpmusepackagelock:
pargs: 1
spelling: CPMUsePackageLock
cpmregisterpackage:
pargs: 1
spelling: CPMRegisterPackage
cpmgetpackageversion:
pargs: 2
spelling: CPMGetPackageVersion
buildexternalproject:
pargs:
nargs: "*"
spelling: BuildExternalProject
kwargs:
GIT_REPOSITORY: 1
GIT_TAG: 1
CONFIGURE_COMMAND: +
BUILD_COMMAND: +
INSTALL_COMMAND: +
BUILD_IN_SOURCE: 1
LOG_OUTPUT_ON_FAILURE: 1
CMAKE_ARGS: +
version: "2"
exclude_patterns:
- "Tests/"
plugins:
duplication:
enabled: false
* De Nevers N. Physical and chemical equilibrium for chemical engineers[M].
"\tthe command must be run with its full path.\n\n"
COO = 10,
var dateA = new Date(a.created_at);
var dateB = new Date(b.created_at);
return dateB - dateA;
Malcom, M.A.M.(2018).Analysis of underground excavations in argillaceous hard
auto Ket = local_K.template block<temperature_size, temperature_size>(
Ket.noalias() +=
title: '{Entwicklung mathematisch-mechanischer Modelle zur Beschreibung des
Stoffverhaltens von Salzgestein in Abh{\"a}ngigkeit von der Zeit und der
Temperatur auf der Grundlage von Laborversuchen mit begleitenden kontinuumsmechanischen
Berechnungen nach der Methode der finiten Elemente}'
- _Dupuit J. Mouvement de l’eau a travers le terrains permeables. C. R. Hebd. Seances Acad. Sci., 45:92–96, 1857._
[codespell]
skip = *.bib,*.css,*.pdf,*.yaml,*.yml,*.vtu,*/.vale,./.git,./GeoLib/IO/XmlIO/OpenGeoSysSTN.xsd,./Tests/Data,./web/content/imprint.md,./web/node_modules,./web/public/imprint/index.html,./web/resources,CITATION.cff,
ignore-words-list = ba,bu,ket,nd,pris,strat,sur,theis,ot,Jupyter,testrunner
exclude-file = .codespellexclude
uri-ignore-words-list = *
{
"name": "ogs-gcc-dev",
"image": "mcr.microsoft.com/devcontainers/cpp",
"mounts": [
"source=devcontainer-cpm-cache,target=/opt/cpm,type=volume",
"source=devcontainer-ccache-cache,target=/opt/ccache,type=volume",
"source=${localWorkspaceFolder}/../build,target=${containerWorkspaceFolder}/../build,type=bind"
],
"features": {
"common": {},
"ghcr.io/devcontainers/features/python:1": {},
"ghcr.io/devcontainers/features/common-utils:2": {
"configureZshAsDefaultShell": true
}
}
}
# .git
Tests/Data
_out/images
......@@ -8,8 +8,5 @@ indent_size = 4
[*.{md,pandoc}]
trim_trailing_whitespace = false
[*.{json,yml,toml,html,css,js,scss}]
indent_size = 2
[Jenkinsfile]
[*.{json,yml,yaml,toml,html,css,js,scss,md}]
indent_size = 2
# Set the default behavior, in case people don't have core.autocrlf set.
* text=auto
# Gocad T Surface files should always be converted to native line endings.
*.ts text
# Enable style checks on source files
*.h hooks.style=uncrustify
*.cpp hooks.style=uncrustify
*.hpp hooks.style=uncrustify
# Git LFS
*.jpg filter=lfs diff=lfs merge=lfs -text
*.png filter=lfs diff=lfs merge=lfs -text
*.pdf filter=lfs diff=lfs merge=lfs -text
*.vtu filter=lfs diff=lfs merge=lfs -text
*.pvtu filter=lfs diff=lfs merge=lfs -text
*.smesh filter=lfs diff=lfs merge=lfs -text
*.3dm filter=lfs diff=lfs merge=lfs -text
*.fem filter=lfs diff=lfs merge=lfs -text
*.ele filter=lfs diff=lfs merge=lfs -text
*.node filter=lfs diff=lfs merge=lfs -text
*.msh filter=lfs diff=lfs merge=lfs -text
*.gml filter=lfs diff=lfs merge=lfs -text
*.vti filter=lfs diff=lfs merge=lfs -text
*.vtp filter=lfs diff=lfs merge=lfs -text
*.bin filter=lfs diff=lfs merge=lfs -text
*.pvtu* filter=lfs diff=lfs merge=lfs -text
*.gif filter=lfs diff=lfs merge=lfs -text
web/resources/_gen/**/*.content filter=lfs diff=lfs merge=lfs -text
# Gocad files
*.sg filter=lfs diff=lfs merge=lfs -text
*@@ filter=lfs diff=lfs merge=lfs -text
on: push
env:
# Path to the CMake build directory.
build: "${{ github.workspace }}/build"
config: "Debug"
jobs:
analyze:
name: Analyze
runs-on: windows-2019
steps:
- name: Checkout repository
uses: actions/checkout@v2
- name: Configure CMake
run: cmake -B ${{ env.build }} -DCMAKE_BUILD_TYPE=${{ env.config }} -DOGS_USE_UNITY_BUILDS=OFF -DOGS_BUILD_TESTING=OFF -DOGS_ENABLE_ELEMENT_PRISM=OFF -DOGS_ENABLE_ELEMENT_PYRAMID=OFF -DOGS_MAX_ELEMENT_DIM=2
# Build is not required unless generated source files are used
# - name: Build CMake
# run: cmake --build ${{ env.build }} --config ${{ env.config }}
- name: Run MSVC Code Analysis
uses: microsoft/msvc-code-analysis-action@v0.1.0
# Provide a unique ID to access the sarif output path
id: run-analysis
with:
cmakeBuildDirectory: ${{ env.build }}
buildConfiguration: ${{ env.config }}
# Ruleset file that will determine what checks will be run
ruleset: NativeRecommendedRules.ruleset
# Paths to ignore analysis of CMake targets and includes
ignoredPaths: build/_deps
# Upload SARIF file to GitHub Code Scanning Alerts
- name: Upload SARIF to GitHub
uses: github/codeql-action/upload-sarif@v1
with:
sarif_file: ${{ steps.run-analysis.outputs.sarif }}
# Upload SARIF file as an Artifact to download and view
- name: Upload SARIF as an Artifact
uses: actions/upload-artifact@v2
with:
name: sarif-file
path: ${{ steps.run-analysis.outputs.sarif }}
*.bak*
build*/
/build*/
*.sw[op]
tags
.ExternalData_*
.DS_Store
# CLion IDE project files
*.iml
......@@ -11,11 +12,32 @@ tags
# Visual Studio Code project files
.vscode
# Conan package manager
conanbuildinfo.cmake
conaninfo.txt
CMakeLists.txt.user*
*.pyc
.venv
Tests/**/*.md5
Tests/Data/Parabolic/HT/InvalidProjectFiles/*.prj
Tests/Data/_out
web/.netlify
CMakeUserPresets.json
scripts/cmake/vtk-*.patch
.snakemake
# clangd and other language servers' caches
.cache
.ccls-cache
# VS Code devcontainer
/.cpm
nohup.out
/Documentation/.vale
# Python build
/_skbuild
*.egg-info/
/wheelhouse
.ipynb_checkpoints
/Applications/Python/_version.py
image: alpine:3.4
stages:
- preparation
- build
- test
- check
- release
- package
before_script:
- apk update && apk add openssl
- wget https://github.com/spf13/hugo/releases/download/v0.18.1/hugo_0.18.1_Linux-64bit.tar.gz
- tar xf hugo_0.18.1_Linux-64bit.tar.gz && cp ./hugo_0.18.1_linux_amd64/hugo_0.18.1_linux_amd64 /usr/bin/hugo
- hugo version
variables:
# Build config
BUILD_TYPE: Release
BUILD_TESTS: "true"
BUILD_CTEST: "true"
CTEST_ARGS: "" # If not empty supply arguments to select tests
CTEST_TIMEOUT: "" # in minutes
CPU_TARGET: ivybridge # envinf1 has oldest cpu
ARTIFACTS_PAGES_URL: https://$CI_PROJECT_ROOT_NAMESPACE.$CI_PAGES_DOMAIN/-/$CI_PROJECT_NAME/-/jobs/$CI_JOB_ID/artifacts
PIPELINE_NAME: "Default pipeline name"
# by default skip performance tests, they can be enabled on isolated test machines
OGS_PERFORMANCE_TESTS_ALLOWED_TO_FAIL: true
pages:
script:
- cd web
- (cd import; python import.py)
- gulp build
- hugo
artifacts:
paths:
- web/public
only:
- web-hugo
workflow:
name: "$PIPELINE_NAME"
rules:
# Disable CI for non-MR user-scoped pipelines
- if: '$CI_MERGE_REQUEST_IID == null && $CI_PROJECT_PATH != "ogs/ogs"'
when: never
- if: "$CI_MERGE_REQUEST_LABELS =~ /.*(workflow::paused|ci::skip).*/"
when: never
- if: $CI_MERGE_REQUEST_LABELS =~ /.*ci::web only.*/
variables:
PIPELINE_NAME: "web only MR pipeline: $CI_MERGE_REQUEST_SOURCE_PROJECT_PATH $CI_MERGE_REQUEST_SOURCE_BRANCH_NAME"
BUILD_TESTS: "false"
CTEST_INCLUDE_REGEX: "nb-"
- if: $CI_MERGE_REQUEST_LABELS =~ /.*ci::linux only.*/
variables:
PIPELINE_NAME: "linux only MR pipeline: $CI_MERGE_REQUEST_SOURCE_PROJECT_PATH $CI_MERGE_REQUEST_SOURCE_BRANCH_NAME"
- if: $CI_MERGE_REQUEST_LABELS =~ /.*ci::mac only.*/
variables:
PIPELINE_NAME: "mac only MR pipeline: $CI_MERGE_REQUEST_SOURCE_PROJECT_PATH $CI_MERGE_REQUEST_SOURCE_BRANCH_NAME"
- if: $CI_MERGE_REQUEST_LABELS =~ /.*ci::win only.*/
variables:
PIPELINE_NAME: "win only MR pipeline: $CI_MERGE_REQUEST_SOURCE_PROJECT_PATH $CI_MERGE_REQUEST_SOURCE_BRANCH_NAME"
- if: $CI_MERGE_REQUEST_LABELS =~ /.*ci::guix only.*/
variables:
PIPELINE_NAME: "guix only MR pipeline: $CI_MERGE_REQUEST_SOURCE_PROJECT_PATH $CI_MERGE_REQUEST_SOURCE_BRANCH_NAME"
- if: $CI_MERGE_REQUEST_IID # merge requests
variables:
PIPELINE_NAME: "MR pipeline: $CI_MERGE_REQUEST_SOURCE_PROJECT_PATH $CI_MERGE_REQUEST_SOURCE_BRANCH_NAME"
- if: $CI_COMMIT_TAG # tags, ogs/ogs repo only
- if: '$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH && $CI_PROJECT_PATH == "ogs/ogs"' # master, ogs/ogs repo only
variables:
PIPELINE_NAME: "master pipeline"
include:
- local: "scripts/ci/extends/*.yml"
- local: "/scripts/ci/pipelines/regular.yml"
rules:
- if: $CI_PIPELINE_SOURCE != "schedule" && $CI_MERGE_REQUEST_LABELS !~ /.*ci::\w* only.*/
- local: "/scripts/ci/pipelines/web.yml"
rules:
- if: $CI_MERGE_REQUEST_LABELS =~ /.*ci::web only?($|,)/
- local: "/scripts/ci/pipelines/web-fast.yml"
rules:
- if: $CI_MERGE_REQUEST_LABELS =~ /.*ci::web only \(fast.*/
- local: "/scripts/ci/pipelines/scheduled.yml"
rules:
- if: '$CI_PIPELINE_SOURCE == "schedule"'
- local: "/scripts/ci/pipelines/linux.yml"
rules:
- if: $CI_MERGE_REQUEST_LABELS =~ /.*ci::linux only.*/
- local: "/scripts/ci/pipelines/mac.yml"
rules:
- if: $CI_MERGE_REQUEST_LABELS =~ /.*ci::mac only.*/
- local: "/scripts/ci/pipelines/win.yml"
rules:
- if: $CI_MERGE_REQUEST_LABELS =~ /.*ci::win only.*/
- local: "/scripts/ci/pipelines/guix.yml"
rules:
- if: $CI_MERGE_REQUEST_LABELS =~ /.*ci::guix only.*/
- local: "/scripts/ci/jobs/build-wheels.yml"
rules:
- if: $CI_MERGE_REQUEST_LABELS =~ /.*ci::wheels only.*/
^[CMake]
*.cmake @bilke
CMakeLists.txt @bilke
[Documentation] @ogs/docs-team
Documentation
web/content
# Hugo pages
- source: /web/content/(.+?)/index\.md/
public: '../\1.html'
[submodule "ThirdParty/VtkFbxConverter"]
path = ThirdParty/VtkFbxConverter
url = https://github.com/ufz-vislab/VtkFbxConverter.git
[submodule "ThirdParty/tetgen"]
path = ThirdParty/tetgen
url = https://github.com/ufz/tetgen.git
[submodule "vtkdiff"]
path = ThirdParty/vtkdiff
url = https://github.com/ufz/vtkdiff.git
[submodule "ThirdParty/tclap"]
path = ThirdParty/tclap
url = https://github.com/ufz/tclap.git
[submodule "ThirdParty/autocheck"]
path = ThirdParty/autocheck
url = https://github.com/ufz/autocheck.git
[submodule "ThirdParty/metis"]
path = ThirdParty/metis
url = https://github.com/scibuilder/metis.git
[submodule "ThirdParty/SwmmInterface"]
path = ThirdParty/SwmmInterface
url = https://github.com/ufz/SwmmInterface.git
[submodule "ThirdParty/cmake-modules"]
path = ThirdParty/cmake-modules
url = https://github.com/bilke/cmake-modules.git
[submodule "ThirdParty/pybind11"]
path = ThirdParty/pybind11
url = https://github.com/pybind/pybind11.git
[submodule "ThirdParty/googletest"]
path = ThirdParty/googletest
url = https://github.com/google/googletest.git
[submodule "ThirdParty/jedbrown-cmake-modules"]
path = ThirdParty/jedbrown-cmake-modules
url = https://github.com/jedbrown/cmake-modules.git
[submodule "ThirdParty/exprtk"]
path = ThirdParty/exprtk
url = https://github.com/ArashPartow/exprtk.git
File mode changed from 100644 to 100755
[lfs]
url = https://ogs.jfrog.io/ogs/api/lfs/ogs
Alireza Hassanzadegan <a.hassanzadegan@gmail.com> AlirezaBGE <a.hassanzadegan@gmail.com>
Aqeel Chaudhry <Aqeel.Chaudhry@ifgt.tu-freiberg.de> aachaudhry <aqeel318@gmail.com>
Carolin Helbig <carolin.helbig@ufz.de>
Chaofan Chen <chaofan.chen@ufz.de>
Christoph Lehmann <chleh@users.noreply.github.com> <christoph.lehmann@ufz.de>
Dmitri Naumov <dmitri.naumov@ufz.de> <github@naumov.de>
Dmitri Naumov <dmitri.naumov@ufz.de> Dmitrij Naumov <dmitrij@naumov.de>
Dmitri Naumov <dmitri.naumov@ufz.de> Dmitry Yu. Naumov <dmitri.naumov@ufz.de>
Francesco Parisio <francesco.parisio@ufz.de>
Francesco Parisio <francesco.parisio@ufz.de> fparisio <francesco.parisio@protonmail.com>
Chaofan Chen <chaofan.chen@ufz.de> <cchaofan1311@gmail.com>
Christian Silbermann <christian.silbermann@ifgt.tu-freiberg.de> cbsilver <christian.silbermann@ifgt.tu-freiberg.de>
Christoph Lehmann <christoph.lehmann@ufz.de> <chleh@users.noreply.github.com>
Dmitri Naumov <dmitri-jurievic.naumov@ifgt.tu-freiberg.de> <github@naumov.de>
Dmitri Naumov <dmitri-jurievic.naumov@ifgt.tu-freiberg.de> Dmitrij Naumov <dmitrij@naumov.de>
Dmitri Naumov <dmitri-jurievic.naumov@ifgt.tu-freiberg.de> Dmitry Yu. Naumov <dmitri.naumov@ufz.de>
Dmitri Naumov <dmitri-jurievic.naumov@ifgt.tu-freiberg.de> <dmitri.naumov@ufz.de>
Dmitri Naumov <dmitri-jurievic.naumov@ifgt.tu-freiberg.de> <Dmitri-Jurievic.Naumov@ifgt.tu-freiberg.de>
Dominik Kern <dominik.kern1@ifgt.tu-freiberg.de> <dominik.kern.ifgt@gmail.com>
Eric Simo <eric.simo@bge.de> ericsimo <kuateric>
Florian Zill <florian.zill@ufz.de> Florian Krupsack <florian.krupsack@ufz.de>
Florian Zill <florian.zill@ufz.de> FZill <48240078+FZill@users.noreply.github.com>
Florian Zill <florian.zill@ufz.de> FZill <florian.zill@ufz.de>
Francesco Parisio <francesco.parisio@ufz.de> <francesco.parisio@protonmail.com>
Haibing Shao <haibing.shao@ufz.de> <36633245+HBShaoUFZ@users.noreply.github.com>
Haibing Shao <haibing.shao@ufz.de> HBShaoUFZ
Jaime Garibay <jaimegaribay.1@gmail.com> garibay-j <jaimegaribay.1@gmail.com>
Jan Thiedau <jan.thiedau@bgr.de> <44462589+ThieJan@users.noreply.github.com>
Jan Thiedau <jan.thiedau@bgr.de> Jan Thiedau <Jan.Thiedau@bgr.de>
Jan Thiedau <jan.thiedau@bgr.de> ThieJan <jan.thiedau@bgr.de>
Jasper Bathmann <jasper.bathmann@ufz.de>
Jeremie Lagraviere <jeremie.lagraviere@gmail.com>
Johannes Boog <johannes.boog@ufz.de> <johannesboog@yahoo.de>
Jörg Buchwald <joerg.buchwald@ufz.de> joerg <joerg.buchwald@ufz.de>
Jörg Buchwald <joerg.buchwald@ufz.de> joerg <joerg@debian>
Jörg Buchwald <joerg.buchwald@ufz.de> joergbuchwald <44933043+joergbuchwald@users.noreply.github.com>
Jörg Buchwald <joerg.buchwald@ufz.de> joergbuchwald <joerg.buchwald@ufz.de>
Karsten Rink <karsten.rink@ufz.de>
Keita Yoshioka <keita.yoshioka@ufz.de>
Lars Bilke <bilke@users.noreply.github.com> <lars.bilke@ufz.de> <larsbilke83@googlemail.com>
Keita Yoshioka <keita.yoshioka@ufz.de> <32516139+KeitaYoshioka@users.noreply.github.com>
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Lars Bilke <lars.bilke@ufz.de> Lars Bilke <lars@bilke.info>
Lars Bilke <lars.bilke@ufz.de> Lars Bilke <larsbilke83@googlemail.com>
Marc Walther <marc.walther@ufz.de>
Mostafa Mollaali <mostafa.mollaali@ufz.de> MostafaMollaali <m.molaali@gmail.com>
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