Update ogstools version

Feliks Kiszkurnorequested to merge
felikskiszkurno/ogs:update_ogstools into master

This MR:

  • Updates ogstools version to current release (0.4.0)
  • Removes dependency on ogs6py
  • Adjusts notebook based benchmarks to current version of ogstools
  • replaces mentions of ogs6py with ogstools

Also, commit after 7c3851f4 convert jupyter notebooks to py files (apart from 8f7c0fa2). It works, but there are some problems:

  • jupytext doesn't recognize ! syntax and treats those lines as comments
  • black formatter in pre-commit fails at lines starting with !

Can be removed, if we decide this is not wished.

Not all notebooks were converted, only those visible on the webpage. Following are used only for testing and were skipped:

  • ./Notebooks/thermo-osmosis.run-skip.ipynb
  • ./Notebooks/FailingNotebook.ci-skip.ipynb
  • ./Elliptic/cube_1x1x1_SteadyStateDiffusion/ssd-cube.ipynb
  • ./NodePartitionedMesh/WithIntegrationPointStress/MixedElements/check_point_cloud.ipynb
  • ./Mechanics/ModifiedCamClay/mtest/ModCamClay_TestIsotrop.ipynb
  • ./Parabolic/ComponentTransport/ReactiveTransport/DecayChain/GlobalImplicitApproach/performance_measurements.ipynb
  • ./TH2M/TH2/heatpipe/comparison.ci-skip.ipynb
Edited by Feliks Kiszkurno

Merge request reports