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### Infrastructure
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- !3555 Clang-format all of the code base. Thriving for consistency.
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- !3562 Added threshold for Doxygen warnings (16).
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- !3570 Enabled compiler warnings for executables. |
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- !3570 Enabled compiler warnings for executables.
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### File I/O
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- !3598 Time is additional dimension HDF5 output data - allows slicing with h5py |
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