[python] Bump snakemake to 7.32.4 (latest <8 version)

See merge request ogs/ogs!4868

Will reduce memory load, especially for smaller machines.

See https://github.com/snakemake/snakemake/issues/2607

[ci] Docker Upgrade Ubuntu base image to 23.04 and gcc to 12

See merge request ogs/ogs!4864

[Mesh] Optional neighbour computations

See merge request ogs/ogs!4853

LargeDeformation; Add volume ratio and deformation gradient output

See merge request ogs/ogs!4861

Dmitri Naumov authored 1 year ago and Dmitri Naumov committed 1 year ago

Uses vectorized tensor determinant.

[MathLib] Avoid the division by zero in componentwiseDivide

See merge request ogs/ogs!4862

[cmake] Fix MKL dependency installation.

See merge request ogs/ogs!4863

componentwiseDivide

[ci] Download boost from sourceforge.

See merge request ogs/ogs!4860

- https://github.com/boostorg/boost/issues/849

[cmake] Install GKlib (metis helper library)

See merge request ogs/ogs!4859

[ci] Build container with netcdf.

See merge request ogs/ogs!4858

Vectorized tensor utilities

See merge request ogs/ogs!4856

The deformation gradient and alike quantities are second order tensors
stored as a vector. Convenience operations on these tensors are
collected in the namespace.

The conversion to a Eigen matrix and back are used so far in tests only
for comparisons with Eigen operations.

Disable FPE for reading vtu files

See merge request ogs/ogs!4855

Unsorted small improvements

See merge request ogs/ogs!4854

[cmake] Install mpmetis.

See merge request ogs/ogs!4857

Follow-up on !4773.

[eve] Use modules for petsc and hdf5.

See merge request ogs/ogs!4852

Reading the VTU files can trigger floating point exceptions. Because
we are not debugging VTK (or other libraries) at this point, the
floating point exceptions are temporarily disabled and are restored
at the end of the scope.