* gnu/services/databases.scm (<postgresql-configuration>): Add locale
  field.
  (postgresql-shepherd-service): Pass locale to initdb.
  (postgresql-service): Add locale default.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

* gnu/services/databases.scm (<postgresql-configuration>): Add port
  field.
  (postgresql-shepherd-service): Pass port to postgres.
  (postgresql-service): Add port default.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

* gnu/packages/gnome.scm (gnome-settings-daemon)[arguments]: Remove
"--disable-network-manager".
[inputs]: Add NETWORK-MANAGER.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

* gnu/packages/gnome.scm (network-manager): Add configuration options
  "--with-systemd-logind=yes" (so we can use elogind to track login sessions)
  and "--with-consolekit=no" (so we don't use consolekit to track sessions,
  since it isn't packaged yet).  Add elogind as an input, and add a snippet to
  replace some references to systemd with elogind.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

* guix/upstream.scm (package-update): Take the basename of the uri
  before trying to determine the extension.

* doc/guix.texi (Invoking guix refresh): Mention cpan updater.

Document that the following CVEs are fixed: CVE-2016-9893, CVE-2016-9895,
CVE-2016-9897, CVE-2016-9898, CVE-2016-9899, CVE-2016-9900, CVE-2016-9901,
CVE-2016-9902, CVE-2016-9904, and CVE-2016-9905.  Note that these are all of
the CVEs fixed in Firefox ESR 45.6.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add comments to patches that
have since been assigned CVEs.

* gnu/packages/bioinformatics.scm (cutadapt, mosaik, pepr)[home-page]:
Update to their respective replacements.

* gnu/packages/boost.scm (mdds)[home-page]: Update it.

* gnu/packages/scheme.scm (chibi-scheme)[home-page]: Update it.

* gnu/packages/python.scm (python-mock)[source]: Use ‘pypi-uri’.
[home-page]: Replace dead Google Code home page.

* doc/guix.texi (Mapped Devices): Update cryptsetup home page.

* gnu/packages/qemu.scm (libosinfo)[native-inputs]: Use a stable URL for
the pci.ids file.

* d3.v3.js, graph.js: New files.
* Makefile.am (EXTRA_DIST): List them.
* guix/graph.scm (%d3js-backend): New variable.
(emit-d3js-prologue, emit-d3js-epilogue, emit-d3js-node,
emit-d3js-edge): New procedures.
(%graph-backends): Add %d3js-backend.

* guix/graph.scm (%graph-backends): New variable.
* guix/scripts/graph.scm (lookup-backend, list-backends): New
procedures.
(%options): Add options for "backend" and "list-backends".
(show-help): Add help texts for "backend" and "list-backend" options.
(%default-options): Add "backend" default.
(guix-graph): Pass backend argument to "export-graph".
* doc/guix.texi (Invoking guix graph): Document the new options.

* guix/graph.scm (<graph-backend>): Add fields "name" and "description".
(%graphviz-backend): Provide values for name and description.
(export-graph): Ignore name and description when matching backends.
(graph-backend-name, graph-backend-description): New procedures.
* tests/graph.scm (make-recording-backend): Initialize name and
description fields of test graph-backend.

* doc/contributing.texi (Submitting Patches): Fix "could could" typo.

Signed-off-by: Leo Famulari <leo@famulari.name>

* gnu/packages/python.scm (python-cryptography, python2-cryptography): Update
  to 1.7.1.
  [arguments]: Remove field.
(python-cryptography-vectors, python2-cryptography-vectors): Update to 1.7.1.

* gnu/packages/man.scm (man-pages): Update to 4.09.

* gnu/packages/rust.scm (rustc): New variable.

Co-authored-by: Eric Le Bihan <eric.le.bihan.dev@free.fr>

* gnu/packages/rust.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add rust.scm.

* gnu/packages/llvm.scm (llvm)[arguments]: Add -DLLVM_INSTALL_UTILS=ON
  to configure-flags.

* guix/import/crate.scm (crate-package?, latest-release,
  %crate-updater): New variables.
* guix/scripts/refresh.scm (%updaters): Add crate updater.
* doc/guix.texi: Add crate updater to table.

* guix/import/crate.scm: New file.
* guix/scripts/import/crate.scm: New file.
* guix/scripts/import.scm (importers): Add crate importer.
* tests/crate.scm: New file.
* doc/guix.texi: Add crate importer to table.
* Makefile.am (MODULES, SCM_TESTS): Add files.

* guix/import/utils.scm (maybe-inputs, maybe-native-inputs,
  package->definition): New variables.

* guix/build-system/cargo.scm: New file.
* guix/build/cargo-build-system.scm: New file.
* Makefile.am (MODULES): Add files.

* gnu/packages/gnuzilla.scm (nss): Update to 3.27.2.
* gnu/packages/certs.scm (nss-certs): Update to 3.27.2.

* gnu/packages/java.scm (icedtea-8): Update to 3.2.0.
[arguments]: Pass '--disable-system-pcsc' and '--disable-system-sctp'
to #:configure-flags.

* gnu/packages/java.scm (icedtea-7): Update to 2.6.8.

* guix/upstream.scm (package-update): Use a url from the list when it
  lacks an extension.

* gnu/packages/statistics.scm (r-bit64): New variable.

* gnu/packages/statistics.scm (r-bit): New variable.

* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.9.
* gnu/packages/linux-libre-4.8-x86_64.conf,
gnu/packages/linux-libre-4.8-i686.conf: Delete files.
* gnu/packages/linux-libre-4.9-x86_64.conf,
gnu/packages/linux-libre-4.9-i686.conf: New files.
* Makefile.am (KCONFIGS): Update accordingly.

* gnu/packages/guile.scm (guile-next): Update to 2.1.5.
[properties]: Add 'upstream-name', 'ftp-server', and 'ftp-directory'.

* gnu/packages/linux.scm (usbutils): Update to 008.
[inputs]: Add EUDEV.

* gnu/packages/linux.scm (wireless-regdb): Update to 2016.06.10.

* gnu/services/databases.scm (<mysql-configuration>): Add port field.
(mysql-configuration-file): Use the port field when creating the
configuration file.
* doc/guix.texi (Database Services): Document it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>

* gnu/packages/xorg.scm (xf86-input-keyboard): Update to 1.9.0.

* gnu/packages/xorg.scm (xf86-video-ati): Update to 7.8.0.

* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.23.0.