[BL] Use shared_ptr in ConfigTree.

See merge request ogs/ogs!3957

Update container-maker: Added ldconfig option to hdf5 and boost.

See merge request ogs/ogs!3961

[ci] Job linux native builds Debug config with optimizations

See merge request ogs/ogs!3597

In the release build the runtime (for a reviseMesh ctest)
is improved only by 1-2%.
For the debug build the runtime improved by more then 50%.

Remove _GLIBCXX_DEBUG from STL_NO_DEBUG.
Defining the macro causes errors when linking against
other code compiled without the macro.

From https://gcc.gnu.org/onlinedocs/libstdc++/manual/debug_mode_using.html
  To use the libstdc++ debug mode, compile your application with the compiler
  flag -D_GLIBCXX_DEBUG. Note that this flag changes the sizes and behavior
  of standard class templates such as std::vector, and therefore you can only
  link code compiled with debug mode and code compiled without debug mode if
  no instantiation of a container is passed between the two translation units.

The remaining definitions are no longer listed in
https://gcc.gnu.org/onlinedocs/libstdc++/manual/using_macros.html
and are removed too.
If needed those can be set with usual compiler flags,
for set of current gcc's STL options.

Lars Bilke authored 3 years ago and Dmitri Naumov committed 3 years ago

Using -O3 and fixed size matrices to speedup ctests.
Using clang for faster (compared to gcc) compilation.

Using dynamic size vector mapping for the vector in number of integration points.

[poetry] Error fixes

See merge request ogs/ogs!3954

https://github.com/python-poetry/poetry/issues/4210

Enable parallel computing in TRM with Taylor-Hood elements

See merge request ogs/ogs!3920

Remove std::filesystem hacks

Closes #3246

See merge request ogs/ogs!3951

TH2M Thermal conductivity revised

See merge request ogs/ogs!3942